Ohms are not the whole story. Inductance plays a role in spark energy. Higher inductance results in higher potential energy storage. Higher ohm coils often also have higher inductance, so you can have high-resistance coils which will actually provide higher spark energy, given the dwell is long enough. Low resistance coils also usually have low inductance, so when given long dwell, the extra energy is just wasted as heat, rather than stored as magnetism and later released as spark energy, as a high resistance coil would.
For stock motors, when the dwell is at a fixed long angle, you would want a high-resistance, high-inductance coil. When it's a short, fixed angle, you want a low-resistance, low-inductance coil.
For high-compression motors, or two-stroke motors, or even if the spark gap is opened up a lot, you may want higher voltage at the expense of higher energy, much like a CDI gives.
Since the Dyna 2000 probably has digital dwell control, using whatever coils Dyna recommends is the way to go.